Anderson, M.J. & S.D. Connell (1999). Predation by fish on intertidal oysters. Marine Ecology Progress Series, Vol. 187, pp. 203-211.

Barnes, P.B., J.E. Grayson & M.G. Chapman (2002). Rock Platform 2001. Survey of recreational use of Sydney's intertidal rocky shores. Final report for Pittwater Council

Bayne, B.L. (2004). Phenotypic flexibility and physiological tradeoffs in the feeding and growth of marine bivalve molluscs. Integrative and Comparative Biology, Vol. 44, pp. 425-432.

Bayne, B.L. (2002). A physiological comparison between Pacific oysters Crassostrea gigas and Sydney Rock oyster Saccostrea glomerata: food, feeding and growth in a shared estuarine habitat. Marine Ecology Progress Series, Vol. 232, pp. 163-178.

Bayne, B.L. (2000). Relations between variable rates of growth, metabolic costs and growth efficiences in individual Sydney rock oysters ( Saccostrea commercialis). Journal of Experimental Marine Biology and Ecology, Vol. 251, pp. 185-204.

Bayne, B.L. (1999). Physiological components of growth differences between individual oysters ( Crassostrea gigas) and a comparison with Saccostrea commercialis. Physiological and Biochemical Zoology, Vol. 72, pp. 705-713.

Bayne, B.L. (1999). Some physiological effects of depurating oysters, Final report to the Oyster Farmers' Association of NSW.

Bayne, B.L. & P.J.C. Honkoop (2003). Phenotypic flexibility. Trends in Ecology and Evolution, Vol. 18, pp. 554-555.

Bayne, B. L. & S. Svensson (2006). Seasonal variability in feeding behaviour, metabolic rates and carbon and nitrogen balances in the Sydney oyster, Saccostrea glomerata (Gould). Journal of Experimental Marine Biology and Ecology, Vol. 332, pp. 12-26.

Bayne, B.L., S. Svensson & J.A. Nell (1999). The physiological basis for faster growth in the Sydney Rock Oyster, Saccostrea commercialis. Biological Bulletin, Vol. 197, pp. 377-387.

Bayne, B.L. & R.M. Warwick. (1998). Feeding and growth of bivalves: observations and models (Journal of Experimental Marine Biology and Ecology, Volume 219). Elsevier, Amsterdam, The Netherlands.

Blount, C. & D. Worthington (2002). Identifying individuals of the sea urchin Centrostephanus rodgersii with high-quality roe in New South Wales, Australia. Fisheries Research, Vol. 58, pp. 341-348.

Chapman, M.G. & A.J. Underwood (2003). Effects of removal of urchins from crevices on associated invertebrate assemblages , Final report to NSW Fisheries.

Chapman, M.G. & A.J. Underwood (1997). Testing the effectiveness of Intertidal Protected Areas in New South Wales, Final report to Environment Australia.

Goodsell, P.J., M.G. Chapman & A.J. Underwood (2005). Experimental assessment of the survival of cultured abalone (Habiotis rubra) seeded in small numbers to natural habitat at Port Stephens, NSW, Final Report for NSW Department of Primary Industries / Fisheries.

Goodsell, P. J., A. J. Underwood, M. G. Chapman & M. P. Heasman (2006). Seeding small numbers of cultured black-lip abalone (Haliotis rubra Leach) to match natural densities of wild populations. Marine and Freshwater Research, Vol. 57, pp. 747-756.

Honkoop, P.J.C. (2003). Physiological costs of reproduction in the Sydney rock oyster Saccostrea glomerulata. How expensive is reproduction? Oecologia, Vol. 135, pp. 176-183.

Honkoop, P.J.C. & B. Bayne (2002). Stocking density and changes in total and somatic mass of the Pacific oyster (Crassostrea gigas) and the Sydney rock oyster(Saccostrea glomerata). Aquaculture, Vol. 213, pp. 171-186.

Honkoop, P.J.C., B.L. Bayne & J. Drent (2003). Flexibility of size of gills and palps in the Sydney rock oyster Saccostrea glomerata (Gould, 1850) and Pacific oyster Crassostrea gigas (Thunberg, 1793). Journal of Experimental Marine Biology and Ecology, Vol. 282, pp. 113-133.

Hoskin, M.G. & A.J. Underwood (2001). Manipulative experiments to assess potential ecological effects of offshore snapper farming in Providence Bay, NSW, Final Report for Pisces Marine Aquaculture Pty, Ltd.

Kennelly, S.J. (2000). Review of research on the Giant Crab Fishery, Final report to Fisheries Research and Development Corporation.

Kennelly, S.J. (1998). The empirical study of marine biological resources. D.Sc. thesis, University of Sydney.

Kennelly, S.J. & J.P. Scandol (2002). Using a fishery-independent survey to assess the status of a spanner crab Ranina ranina fishery: univariate analyses and biomass modelling. Crustaceana, Vol. 75, pp. 13-29.

Lasiak, T.A. & A.J. Underwood (2002). Experimental assessment of potential ecological impacts of longline mussel farming in Twofold Bay, Eden. Final report for NSW Cultured Mussel Growers Association Inc.

Liggins, G.W. (2001). Discarded catch in a multi-species trawl fishery. Ph.D. thesis, University of Sydney.

Lindegarth, M., D. Valentinsson, M. Hansson & M. Ulmestrand (2000). Effects of trawling disturbances on temporal and spatial structure of benthic soft-sediment assemblages in Gullmarsfjorden, Sweden. ICES Journal of Marine Science., Vol. 57, pp. 1369-1376.

Monteiro, S.M. (2002). Effects of harvesting on assemblages associated with the ascidian Pyura stolonifera (Heller, 1878). Ph.D. thesis, University of Sydney.

Monteiro, S.M., M.G. Chapman & A.J. Underwood (2002). Patches of the ascidian Pyura stolonifera (Heller, 1878): structure of habitat and associated intertidal assemblages. Journal of Experimental Marine Biology and Ecology, Vol. 270, pp. 171-189.

Montgomery, S.S. (1998). Relative abundance of the eastern rock lobster, Jasus verreauxi(H. Milne Edwards). Ph.D. thesis, University of Sydney.

Montgomery, S.S. & J.R. Craig (2003). Effects of moon phase and soak time on catches of Jasus (Sagmariasus) verreauxi recruits on collectors. Marine and Freshwater Research, Vol. 54, pp. 847-851.

O'Donnell, K. (2004). Growth and reproduction of the squid Photololigo etheridgei in the Hawkesbury River. Ph.D. thesis, University of Sydney.

Porat, Y. (2001). Potential ecological impacts of oyster-farms in the Hawkesbury River. B.Sc. Honours thesis, University of Sydney.

Rossi, F. & A.J. Underwood (2002). Small-scale disturbance and increased nutrients as influences on intertidal macrobenthic assemblages: experimental burial of wrack in different intertidal environments. Marine Ecology Progress Series, Vol. 241, pp. 29-39.

Rotherham, D., A. J. Underwood, M. G. Chapman & C. A. Gray (2007). A strategy for developing scientific sampling tools for fishery-independent surveys of estuarine fish in NSW, Australia. ICES Journal of Marine Science - Proceedings of the ICES Symposium, Boston, 2006 Vol. 64, 1512-1516

Scandol, J.P. (2003). Landed catch as an indicator for the management of fisheries, Final report for NSW Fisheries.

Scandol, J.P. (2003). Stock status indicators for the management of fisheries in NSW, Final report for NSW Fisheries.

Scandol, J.P. (2003). Use of Cumulative Sum (CUSUM) control charts of landed catch in the management of fisheries. Fisheries Research, Vol. 64, pp. 19-36.

Scandol, J.P. (2001). What is the role of computer simulation in the ecologically sustainable development of Australian fisheries? Proceedings of the International Congress on Modelling and Simulation, Vol. 2, pp. 757-762.

Scandol, J.P. & R.E. Forrest (2001). Commercial catches as an indicator of stock status in NSW estuarine fisheries: trigger points, uncertainty and interpretation. Proceedings of the Australian Society for Fish Biology workshop"Towards sustainability of data-limited multi-sector fisheries". pp. 77-97.

Scandol, J.P. & R.E. Forrest (2001). Modelling services for the NSW Estuary General Fishery, Final report for NSW Fisheries.

Scandol, J.P. & S.J. Kennelly (2001). Blue crab fishery biological research review, Final report to the Department of Primary Industries and Resources, South Australia.

Scandol, J. P., A. J. Underwood & M. J. Broadhurst (2006). Experiments in gear configuration to reduce bycatch in an estuarine squid-trawl fishery. Fishery Bulletin, Vol. 104, pp. 533-541.

Tobin, J. (1998). Experimental evaluation of factors that influence rates of growth of Sydney rock oysters ( Saccostrea commercialis) in estuarine habitats. B.Sc. Honours thesis, University of Sydney.

Underwood, A.J., B.L. Bayne, P.J.C. Honkoop & J.P. Scandol (2002). Optimal stocking density for Sydney and Pacific oyster cultivation (Project No. 99/307). Final report to Fisheries Research and Development Corporation

Underwood, A.J. & M.G. Chapman (2000). Comparisons of animals and plants in Intertidal Protected Areas and reference locations around Sydney, Final report for N.S.W. Fisheries.

Underwood, A.J. & M.G. Hoskin (1999). Ecological sampling for assessment of potential environmental impacts of the trial snapper farm at Port Stephens, NSW, Final report to Pisces Marine Aquaculture Pty,Ltd.

Underwood, A.J. & M.G. Hoskin (1999). Examination of potential ecological effects of mussel culture in Twofold Bay, NSW, Final Report to Mussel Growers Association, Eden, NSW.

Underwood, A.J., J.P. Scandol & I.W. Montgomery (2001). Quantitative Training Unit for Fisheries (QTUF), Phase II. (Project No. 98/348)., Final Report for Fisheries Research and Development Corporation